Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
CHOL | rs11043104 | chr11:11141040 | A/G | 7.36E-5 | 20 | 31.42 | 0 | 20.07 | KM Plot |
CHOL | rs111569674 | chr4:63654293 | C/T | 2.21E-5 | 19 | 25.28 | 0 | 0 | KM Plot |
CHOL | rs112240764 | chr4:63648884 | C/A | 2.21E-5 | 19 | 25.28 | 0 | 0 | KM Plot |
CHOL | rs112384430 | chr4:63654301 | CCTA/C | 2.21E-5 | 19 | 25.28 | 0 | 0 | KM Plot |
CHOL | rs113466756 | chr4:63648869 | C/T | 2.21E-5 | 19 | 25.28 | 0 | 0 | KM Plot |
CHOL | rs11752128 | chr6:4143748 | C/T | 1.31E-5 | 20 | 26.93 | 0 | 0 | KM Plot |
CHOL | rs11754487 | chr6:4143749 | A/G | 1.31E-5 | 20 | 26.93 | 0 | 0 | KM Plot |
CHOL | rs117794183 | chr4:180471105 | G/A | 7.36E-5 | 20 | 31.42 | 0 | 21.67 | KM Plot |
CHOL | rs12532240 | chr7:36693437 | T/A | 0.000121 | 19 | 35.9 | 0 | 21.67 | KM Plot |
CHOL | rs139786048 | chr4:63648858 | A/G | 2.21E-5 | 19 | 25.28 | 0 | 0 | KM Plot |
CHOL | rs141851828 | chr4:63648840 | C/G | 2.21E-5 | 19 | 25.28 | 0 | 0 | KM Plot |
CHOL | rs144059498 | chr7:57288785 | G/C | 0.000121 | 19 | 35.9 | 0 | 21.67 | KM Plot |
CHOL | rs148078118 | chr4:63648839 | C/T | 2.21E-5 | 19 | 25.28 | 0 | 0 | KM Plot |
CHOL | rs150629070 | chr4:63648843 | A/G | 2.21E-5 | 19 | 25.28 | 0 | 0 | KM Plot |
CHOL | rs17045433 | chr1:217358181 | C/T | 2.21E-5 | 19 | 31.42 | 0 | 0 | KM Plot |